The effects of floating islands on the changes in phytoplankton community structure were investigated in a small artificial pond. The floating islands planted with various emergent macrophytes covered 35% of total water surface area of the pond. Total 17 genera and 25 species of phytoplankton were found in the pond, of which Dinophyceae was 1 genera and 1 species, Cyanophyceae 1 genera and 1 species, Bacillariophyceae 6 genera and 8 species, and Chlorophyceae 9 genera and 15 species. Dominant phytoplanktons under floating islands were changed from Aphanizomenon sp. as a Cyanophyceae to Golenkinia radiata, Kirchneriella contorta and Micractinium pusillum as a Chlorophyceae for 56 days after the construction of floating islands on July 24, 2001. The changes of dominant phytoplanktons of the control without floating islands were similar to those under floating islands in July and August, but Aphanizomenon sp. was rapidly increased in the control sites in September. About 99% of the cell number of Aphanizomenon sp. was disappeared for a month after construction of floating islands. Species diversity of phytoplankton under the floating islands of Iris pseudoacorus was higher than those of other macrophytes as well as the control without floating islands. The cell numbers of Cyanophyceae and Chlorophyceae were fewer under the floating islands of I. pseudoacorus than those of other macrophytes. Our results showed that the floating islands could be a useful eco-technique for the control of water bloom by Cyanophyceae and Chlorophyceae in a pond ecosystem.