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Single-strand DNA Binding of Actinomycin D with a Chromophore 2-Amino to 2-Hydroxyl Substitution
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  • Single-strand DNA Binding of Actinomycin D with a Chromophore 2-Amino to 2-Hydroxyl Substitution
  • Single-strand DNA Binding of Actinomycin D with a Chromophore 2-Amino to 2-Hydroxyl Substitution
저자명
Yoo. Hoon,Rill. Randolph L.
간행물명
Journal of biochemistry and molecular biology
권/호정보
2003년|36권 3호|pp.305-311 (7 pages)
발행정보
생화학분자생물학회
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정기간행물|ENG|
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
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기타언어초록

A modified actinomycin D was prepared with a hydroxyl group that replaced the amino group at the chromophore 2-position, a substitution known to strongly reduce affinity for double-stranded DNA. Interactions of the modified drug on single-stranded DNAs of the defined sequence were investigated. Competition assays showed that 2-hydroxyactinomycin D has low affinity for two oligonucleotides that have high affinities ($K_a;=;5-10{ imes}10^6;M^{-1}$ oligomer) for 7-aminoactinomycin D and actinomycin D. Primer extension inhibition assays performed on several single-stranded DNA templates totaling around 1000 nt in length detected a single high affinity site for 2-hydroxyactinomycin D, while many high affinity binding sites of unmodified actinomycin D were found on the same templates. The sequence selectivity of 2-hydroxyactinomycin D binding is unusually high and approximates the selectivity of restriction endonucleases. Binding appears to require a complex structure, including residues well removed from the polymerase pause site.