The goals of this research are to look into the logistics systems and to have a thorough grasp on the status of legal systems such as taxation and customs clearance practices and, further, to draw up an interoperable scheme seamlessly linking those two on a national scale. In this research we looked into the business process and related information of border-crossing logistics systems between B2B marketplaces. We also investigated the status of taxation systems and customs clearance practices in order to associate e-marketplaces with one another. We proposed interoperable scheme for seamless linking between B2B e-marketplace based on marketplace repository model.