Wake distribution data of stem flow fields have been accumulated systematically by model tests. If the correlation between geometrical hull information and wake distribution is grasped through the accumulated data, this correlation can be helpful to designing similar ships. In this paper, Neuro-Fuzzy system that is emerging as a new knowledge over a wide range of fields nowadays is tried to estimate the wake distribution on the propeller plan. Neuro-Fuzzy system is well known as one of prospective and representative analysis method for prediction, classification, diagnosis of real complicated world problem, and it is widely applied even in the engineering fields. For this study three-dimensional stern hull forms and nominal wake values from a model test ate structured as processing elements of input and output layer, respectively. The proposed method is proved as an useful technique in ship design by comparing measured wake distribution with predicted wake distribution.