The specific some types of compressors are appropriate for a use in hydrogen gas station. Metal diaphragm type of hydrogen compressor is one of them, which can satisfy the critical requirements of maintaining gas purity and producing high pressure over 850 bar. The objective of this study is to investigate an characteristics of compression through two-way Fluid-Structure-Interaction (FSI) analysis as bulk modulus and initial volume of oil independently varies. Deflection of diaphragm, oil density, gas and oil pressure were analyzed during a certain period of compression process. According to the analysis results, bulk modulus and initial volume remarkably affected deflection of diaphragm, oil density, gas and oil pressure. The highest gas pressure were attained with the highest bulk modulus of $7e^9;N/m^2$ and the lowest initial oil volume of 80 cc.