The Shihwa constructed wetland was established for the treatment of severely poluted water from Banwoul, Donghwa and Samhwa streams. This study was focused on investigating the structure of epiphytic diatom communities on reed (Phragmites communis) planting area at Banwoul high wetland (3 stations) and low wetland (3 stations) from March to October 2005. The concentration of T-N of inlet stations from the streams were decreased by flowed through the wetland, but the concentration of T-P were increased at outflow part. Epiphytic diatoms on the reed were a total 109 taxa which were composed of 103 species, 5 varieties, 1 unidentified species. The standing crops were rapidly decreasing tendency from spring to autumn but chlorophyll-a concentration were showed a very irregulated changes. Dominant species were 6 taxa which were Achnanthes minutissima in the early investigation, and were changed to the genus Navicula and the genus Nitzschia in the summer. DAIpo were ranged the values of $20.2{sim}51$, which were mesosaprobic states at the high wetland and ranged the values of $12.4{sim}52$, which were polysaprobic to mesosaprobic states at the low wetland. TDI were ranged the values of $28.8{sim}94.5$, which were oligotrophic to eutrophic state at the high wetland and ranged the values of $33.3{sim}89.7$ which were mesotrophic to eutrophic states at the low wetland. The healthy assessment (DAIpo and TDI) of water ecosystem were showed clean-bad from spring to autumn. These epiphytic diatom communities were determinated by the biological factor such as the growth of reed and the physical factors such as water temperature, light penetration and SS and so on.