Traditionally research in Service Oriented Architecture(SOA) security has focused primarily on exploiting standards and solutions separately. There exists no unified methodology for SOA security to manage risks at the enterprise level. It needs to analyze preliminarily security threats and to manage enterprise risks by identifying vulnerabilities of SOA. In this paper, we propose a metric-based vulnerability assessment method using dynamic properties of services in SOA. The method is to assess vulnerability at the architecture level as well as the service level by measuring run-time dependency between services. The run-time dependency between services is an important characteristic to understand which services are affected by a vulnerable service. All services which directly or indirectly depend on the vulnerable service are exposed to the risk. Thus run-time dependency is a good indicator of vulnerability of SOA.