The present study summarizes the occurrence, distribution and autecology of 12 taxa of the class Cyanophyceae collected from several swamps, reservoir and highland wetlands in South Korea from 2009 to 2012. A new species, Anabaena koreana sp. nov. and 11 taxa of blue-green algae newly recorded are described and illustrated. Anabaena koreana is similar to A. oumiana, A. spiroides and A. crassa in that the trichomes form regular coils. However, A. koreana is distinguished from these three species by the morphological characteristics of the vegetative cell, heterocyst, and akinet shape and size. This study considers 12 blue-green algal species, including a new species, Anabaena koreana sp. nov. and 11 species that are recorded for the first time in the Korean freshwater algal flora. Among them, the genus Nostochopsis Wood ex Bornet et Flahault 1886 had not previously been recorded in Korea.