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In silico Identification of SFRP1 as a Hypermethylated Gene in Colorectal Cancers
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  • In silico Identification of SFRP1 as a Hypermethylated Gene in Colorectal Cancers
  • In silico Identification of SFRP1 as a Hypermethylated Gene in Colorectal Cancers
저자명
Kim. Jongbum,Kim. Sangsoo
간행물명
Genomics & informatics
권/호정보
2014년|12권 4호|pp.171-180 (10 pages)
발행정보
한국유전체학회
파일정보
정기간행물|ENG|
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

Aberrant DNA methylation, as an epigenetic marker of cancer, influences tumor development and progression. We downloaded publicly available DNA methylation and gene expression datasets of matched cancer and normal pairs from the Cancer Genome Atlas Data Portal and performed a systematic computational analysis. This study has three aims to screen genes that show hypermethylation and downregulated patterns in colorectal cancers, to identify differentially methylated regions in one of these genes, SFRP1, and to test whether the SFRP genes affect survival or not. Our results show that 31 hypermethylated genes had a negative correlation with gene expression. Among them, SFRP1 had a differentially methylated pattern at each methylation site. We also show that SFRP1 may be a potential biomarker for colorectal cancer survival.