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An Effective Data Analysis System for Improving Throughput of Shotgun Proteomic Data based on Machine Learning
나승진, 백은옥, Na. Seung-Jin, Paek. Eun-Ok 한국정보과학회 정보과학회논문지. Journal of KIISE. 소프트웨어 및 응용 11 Pages
한국정보과학회 정보과학회논문지. Journal of KIISE. 소프트웨어 및 응용 2007, Vol.34 No.10 889-899 (11 pages)
최근 프로테오믹스 분야에서 단백질의 추출, 분리기술의 발전과 고성능 질량분석 장비로 인하여 대량으로, 또 빠르게 샘플을 분석하는 것이 가능해짐에 따라서, 한번의 실험으로부터 얻어지는 실험데이타의 양이 대폭 늘어나게 되었다. 따라서 대량의 데이타를 어떻게 처리하여 필요한 정보만을 얻어내는가가 큰 이슈가 되고 있다. 하지만 기존의 데이타 해석과정은 불필요하게 계산자원을 낭비하는 요소를 상당 부분을 포함하고 있고, 이로 인해 데이타 해석 시간이 증가함은 물론, 종종 옳지 않은 해석 결과를 생성함으로써 결과에 대한... -
HMM-based Adaptive Frequency-Hopping Cognitive Radio System to Reduce Interference Time and to Improve Throughput
Sohn. Sung-Hwan, Jang. Sung-Jeen, Kim. Jae-Moung 한국인터넷정보학회 KSII Transactions on internet and information systems : TIIS 16 Pages
한국인터넷정보학회 KSII Transactions on internet and information systems : TIIS 2010, Vol.4 No.4 475-490 (16 pages)
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Erratum to "Microfluidic System Based High Throughput Drug Screening System for Curcumin/TRAIL Combinational Chemotherapy in Human Prostate Cancer PC3 Cells" [Biomol. Ther. 22 (2014) 355-362]
An. Dami, Kim. Kwangmi, Kim. Jeongyun 한국응용약물학회 Biomolecules & therapeutics 1 Pages
한국응용약물학회 Biomolecules & therapeutics 2014, Vol.22 No.5 475-475 (1 pages)
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Microfluidic System Based High Throughput Drug Screening System for Curcumin/TRAIL Combinational Chemotherapy in Human Prostate Cancer PC3 Cells
An. Dami, Kim. Kwangmi, Kim. Jeongyun 한국응용약물학회 Biomolecules & therapeutics 8 Pages
한국응용약물학회 Biomolecules & therapeutics 2014, Vol.22 No.4 355-362 (8 pages)
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Development of a FRET-based High-Throughput Screening System for the Discovery of Hsp90 Inhibitors
Oh. Sang-Mi, Ko. Yeon-Jin, Lee. Han-Jae, Kim. Jong-Hoon, Chung. Young-Sun, Park. Seung-Bum 대한화학회 Bulletin of the Korean Chemical Society 4 Pages
대한화학회 Bulletin of the Korean Chemical Society 2011, Vol.32 No.9 3229-3232 (4 pages)
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Throughput of V-BLAST System using Hybrid ARQ in Correlated Fading Channels
김봉회, 황승훈, Kim. Bong-Hoe, Hwang. Seung-Hoon 대한전자공학회 電子工學會論文誌. Journal of the Institute of Electronics Engineers of Korea. TC, 통신 6 Pages
대한전자공학회 電子工學會論文誌. Journal of the Institute of Electronics Engineers of Korea. TC, 통신 2008, Vol.45 No.1 66-71 (6 pages)
본 논문에서는 H-ARQ를 위한 NACK 신호를 이용한 안테나 스위칭 방식을 제안하고 V-BLAST 시스템에서 분석하였다. 여기서 전송 안테나는 재전송시 번갈아 스위칭 되어 동작한다. 상관된 페이딩 채널에서 제안된 방식의 채널 용량을 해석적으로 분석함으로써, 채널 상관성의 악영향이 안테나 스위칭 방식으로 줄어듦을 보인다. 시뮬레이션 결과를 통해 상관된 페이딩 채널에서 평균 수율은 큰 복잡도의 증가 없이 개선되어질 수 있음을 보인다. -
Establishment of High Throughput Screening System Using Human Umbilical Cord-derived Mesenchymal Stem Cells
Park. Eu-Gene, Cho. Tae-Jun, Oh. Keun-Hee, Kwon. Soon-Keun, Lee. Dong-Sup, Park. Seung-Bum, Cho. Jae-Jin 대한구강생물학회 International journal of oral biology : official journal of the Korean Academy of Oral Biology and t 8 Pages
대한구강생물학회 International journal of oral biology : official journal of the Korean Academy of Oral Biology and t 2012, Vol.37 No.2 43-50 (8 pages)
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The Use of a Tobacco mosaic virus-Based Expression Vector System in Chrysanthemum
한국식물병리학회 The Plant Pathology Journal 5 Pages
한국식물병리학회 The Plant Pathology Journal 2017, 33권 4호 9 429-433 (5 pages)
Chrysanthemums (Chrysanthemum morifolium) are susceptible to tobacco mosaic virus (TMV). TMV-based expression vectors have been used in high-throughput experiments for production of foreign protein in plants and also expressing green fluorescent protein (GFP) to allow visualization of TMV movement. Here, we used TMV expressing the GFP to examine the infection of chrysanthemum by a TMV-based expression vector. Viral replication, movement and GFP expression by TMV-GFP were verified in upper leaves... -
Melting Characteristics of Simulated Non-combustible Radioactive Wastes in a Plasma Torch Melter System
Seung-Chul Park, Hyun-Je Cho, Cheon-Woo Kim 한국열환경공학회 열환경공학 7 Pages
한국열환경공학회 열환경공학 2011, 제 8권 3호 7 53-59 (7 pages)
with the invention of the KHNP-CRI patented power supply system. Among a series of dual mode performance tests, a 24-hour melting test for typical surrogate non-combustible waste is introduced in this paper. Electrical currents and voltages of the system was well confined under the operation limits at the test. And the slag melt was well stabilized without severe abnormal behavior as well. But for safe and long-run operation, the advanced slag tapping equipment and slag level measurement device... -
High Throughput Screening of Antifungal Metabolites Against Colletotrichum gloeosporioides
한국식물병리학회 The Plant Pathology Journal 7 Pages
한국식물병리학회 The Plant Pathology Journal 2008, 24권 1호 4 24-30 (7 pages)
Inhibition of appressorium formation by culture filtrate of A5005 was partially restored by the exogenous calcium. This results suggests that chemicals within A5005 extents its biological activity through disturbance of intracellular Ca2+ regulation during prepenetration morphogenesis by C. gloeosporioides. Together, cell-based and target-oriented screening system used in this study should be applicable for other plant pathogenic fungi prerequisite appressorium formation to infect their hosts. -
Evolved Packet System의 3G LTE에서 패킷별 지연허용시간을 고려한 AMC 선택 기법
전경구, Jun. Kyung-Koo 한국통신학회 한국통신학회논문지. The journal of Korea Information and Communications Society. 무선통신 7 Pages
한국통신학회 한국통신학회논문지. The journal of Korea Information and Communications Society. 무선통신 2008, Vol.33 787-793 (7 pages)
요소로 보고, 패킷별로 다른 최대 패킷전송 오류 확률 $P_{max}$를 적용하여 AMC 전송 모드를 선정하는 기준으로 삼는다. 이러한 $P_{max}$를 결정할 때는 채널 상황은 물론 패킷별 QoS 요구상황, 그리고 NACK-to-ACK 에러 확률을 고려하여 결정한다. 이러한 방식의 목적은 QoS를 만족시키면서 동시에 spectral efficiency를 최대로 하는 것이다. 시뮬레이션을 통해 제안한 방법과 기존 방법을 비교한 결과, 지연허용 시간 위반과 재전송과 관련깊은 status report 발생은 10% 감소하고, throughput이 12% 증가했음을 확인할 수 있었다. -
Analysis of Interference Impact of UWB System on WiBro System
윤영근, 홍헌진, 이일규, 최익권, 곽경섭, Yoon. Young-Keun, Hong. Heon-Jin, Lee. Il-Kyoo, Choi. Ik-Guen, Kwak. Kyung-Sub 한국통신학회 한국통신학회논문지. The journal of Korea Information and Communications Society. 무선통신 6 Pages
한국통신학회 한국통신학회논문지. The journal of Korea Information and Communications Society. 무선통신 2006, Vol.31 814-819 (6 pages)
상황을 고려하여 단일 UWB 간섭의 경우는 최소결합손실(MCL) 방법으로 간섭분석을 수행하였고, 다중 UWB 간섭인 경우는 실제 상황을 고려한 간섭 시나리오를 바탕으로 몬테칼로(MC) 방법으로 간섭 시뮬레이션을 수행하였다. 분석 및 시뮬레이션 결과 두 시스템의 양립성을 보장하기 위해 단일 간섭 원 과 희생(victim) 수신기 사이의 이격 거리는 34.4m 이상이 요구되었다. 또한, 다중 UWB 간섭 원 인 경우에 WiBro 단말기의 최소 throughput 손실을 보장하기 위해 허용할 수 있는 UWB 송신전력 레벨은 약 - 81 dBm / MHz 이하로... -
Optimization of Expression Conditions for Soluble Protein by Using a Robotic System of Multi-culture Vessels
Ahn. Woo-Sung, Ahn. Ji-Young, Jung. Chan-Hun, Hwang. Kwang-Yeon, Kim. Eunice Eun-Kyeong, Kim. Joon, Im. Ha-Na, Kim. Jin-Oh, Yu. Myeong-H 한국미생물생명공학회 Journal of microbiology and biotechnology 7 Pages
한국미생물생명공학회 Journal of microbiology and biotechnology 2007, Vol.17 No.11 1868-1874 (7 pages)
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Identification of Inhibitors Against BAK Pore Formation using an Improved in vitro Assay System
Song. Seong-Soo, Lee. Won-Kyu, Aluvila. Sreevidya, Oh. Kyoung Joon, Yu. Yeon Gyu 대한화학회 Bulletin of the Korean Chemical Society 6 Pages
대한화학회 Bulletin of the Korean Chemical Society 2014, Vol.35 No.2 419-424 (6 pages)
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Genome-Wide Analysis of Type VI System Clusters and Effectors in Burkholderia Species
한국식물병리학회 The Plant Pathology Journal 12 Pages
한국식물병리학회 The Plant Pathology Journal 2018, 34권 1호 2 11-22 (12 pages)
secretion system (T6SS) has been discovered in a variety of gram-negative bacteria as a versatile weapon to stimulate the killing of eukaryotic cells or prokaryotic competitors. Type VI secretion effectors (T6SEs) are well known as key virulence factors for important pathogenic bacteria. In many Burkholderia species, T6SS has evolved as the most complicated secretion pathway with distinguished types to translocate diverse T6SEs, suggesting their essential roles in this genus. Here we attempted... -
Construction of a System for the Strawberry Nursery Production towards Elimination of Latent Infection of Anthracnose Fungi by a Combination of PCR and Microtube Hybridization
한국식물병리학회 The Plant Pathology Journal 7 Pages
한국식물병리학회 The Plant Pathology Journal 2017, 33권 1호 9 80-86 (7 pages)
from fungal hyphae. For specific detection of the fungi, PCR primers were designed to amplify the fungal MAT1-2 gene. The subsequent MTH step using the PCR products as probes can replace the laborious electrophoresis step providing us sequence information and high-throughput screening. Using this method, we have conducted a survey for a few thousands nursery plants every year for three consecutive years, and finally succeeded in eliminating latent infection in the third year of challenge. -
Research Notes : Estrogenic Compounds Compatible with a Conditional Gene Expression System for the Phytopathogenic Fungus Fusarium graminearum
한국식물병리학회 The Plant Pathology Journal 5 Pages
한국식물병리학회 The Plant Pathology Journal 2011, 27권 4호 7 349-353 (5 pages)
in this system. Among them, β-estradiol was able to successfully induce the expression of a gene controlled by Pzear, while estrone was only able to partially induce its expression but the other two compounds were not effective. In combination, these results demonstrate that β-estradiol can replace ZEA in this conditional gene expression system, thereby eliminating the need to use the more expensive reagent, ZEA, and facilitating high-throughput functional analyses of F. graminearum in future... -
Generation of Expression Vectors for High-Throughput Functional Analysis of Target Genes in Schizosaccharomyces pombe
Ahn. Ji-Won, Choi. Chung-Hae, Kang. Chang-Mo, Kim. Chun-Ho, Park. Hee-Moon, Song. Kyung-Bin, Hoe. Kwang-Lae, Won. Mi-Sun, Chung. Kyung-S 한국미생물학회 The journal of microbiology 7 Pages
한국미생물학회 The journal of microbiology 2009, Vol.47 No.6 789-795 (7 pages)
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Molecular-level evaluation of selected periodontal pathogens from subgingival regions in canines and humans with periodontal disease
Magdalena Goły?ska, Izabela Polkowska, Małgorzata Bartoszcze-Tomaszewska, Aleksandra Sobczy?ska-Rak, Łukasz Matuszewski 대한수의학회 Journal of Veterinary Science 8 Pages
대한수의학회 Journal of Veterinary Science 2017, 제 18권 제 1호 7 51-58 (8 pages)
Dogs commonly serve as a model for various human conditions, including periodontal diseases. The aim of this study was to identify the anaerobic bacteria that colonize the subgingival areas in dogs and humans by using rapid real-time polymerase chain reaction (RT-PCR)-based tests and to compare the results obtained in each species. Bacterial microflora evaluations, both quantitative and qualitative, were performed by applying ready-made tests on twelve dogs and twelve humans. Five samples were... -
Quantitative real-time polymerase chain reaction for detecting Mycoplasma hyosynoviae and Mycoplasma hyorhinis in pen-based oral, tonsillar, and nasal fluids
João Carlos Gomes Neto, Leslie Bower, Barbara Z. Erickson, Chong Wang, Matthew Raymond, Erin L. Strait 대한수의학회 Journal of Veterinary Science 7 Pages
대한수의학회 Journal of Veterinary Science 2015, 제 16권 제 2호 9 195-201 (7 pages)
Mycoplasma (M.) hyorhinis and M. hyosynoviae are pathogens known to cause disease in pigs post-weaning. Due to their fastidious nature, there is increased need for culture-independent diagnostic platforms to detect these microorganisms. Therefore, this study was performed to develop and optimize quantitative real-time PCR (qPCR) assays to rapidly detect M. hyorhinis and M. hyosynoviae in pen-based oral fluids as well as nasal and tonsillar fluids as proxies for samples used in swine herd... -
An overview of calf diarrhea - infectious etiology, diagnosis, and intervention
Yong-il Cho, Kyoung-Jin Yoon* 대한수의학회 Journal of Veterinary Science 17 Pages
대한수의학회 Journal of Veterinary Science 2014, 제 15권 제 1호 1 1-17 (17 pages)
of the 2007 National Animal Health Monitoring System for U.S. dairy, half of the deaths among unweaned calves was attributed to diarrhea. Multiple pathogens are known or postulated to cause or contribute to calf diarrhea development. Other factors including both the environment and management practices influence disease severity or outcomes. The multifactorial nature of calf diarrhea makes this disease hard to control effectively in modern cow-calf operations. The purpose of this review is to... -
Sporozoite proteome analysis of Cryptosporidium parvum by one-dimensional SDS-PAGE and liquid chromatography tandem mass spectrometry
AMAM Zonaed Siddiki* 대한수의학회 Journal of Veterinary Science 8 Pages
대한수의학회 Journal of Veterinary Science 2013, 제 14권 제 2호 1 107-114 (8 pages)
Despite the development of new technologies, new challenges still remain for large scale proteomic profiling when dealing with complex biological mixtures. Fractionation prior to liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis is usually the preferred method to reduce the complexity of any biological sample. In this study, a gel LC-MS/MS approach was used to explore the stage specific proteome of Cryptosporidium (C.) parvum. To accomplish this, the sporozoite protein of C.... -
Plasma haptoglobin and immunoglobulins as diagnostic indicators of deoxynivalenol intoxication
Eun-Joo Kim, Sang-Hee Jeong, Joon-Hyoung Cho, Hyun-Ok Ku, Hyun-Mi Pyo, Hwan-Goo Kang, Kyoung-Ho Choi 대한수의학회 Journal of Veterinary Science 10 Pages
대한수의학회 Journal of Veterinary Science 2008, 제 9권 제 3호 5 257-266 (10 pages)
This study aimed to discover potential biomarkers for dioxynivalenol (DON) intoxication. B6C3F1 male mice were orally exposed to 0.83, 2.5 and 7.5 mg/kg body weight (bw) DON for 8 days and the differential protein expressions in their blood plasma were determined by SELDI - Time-of-Flight/ Mass Spectrometry (TOF/MS) and the immunoglobulins (Igs) G, A, M and E in the serum were investigated. 11.7 kDa protein was significantly highly expressed according to DON administration and this protein was... -
Validation of an electrometric blood cholinesterase measurement in goats
M. M.H. Al-Jobory, F. K. Mohammad 대한수의학회 Journal of Veterinary Science 5 Pages
대한수의학회 Journal of Veterinary Science 2005, 제 6권 제 4호 7 299-303 (5 pages)
A modified electrometric method was described and validated for measurement of plasma and erythrocyte cholinesterase activities in 6~18 months old goats. The enzymatic reaction mixture contained 3 ml distilled water, 3 ml barbital-phosphate buffer (pH 8.1), 0.2 ml plasma or erythrocytes and 0.1 ml acetylthiocholine iodide (7.5%) as a substrate. The mixture was incubated at 37 degrees C for 40 minutes. The pH of the reaction mixture was determined by a pH meter before and after the incubation....


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