We propose a modified 6-node element, where the sampling point of Gauss quadrature moved in the thickness direction. The modified 6-node element has been applied to static problems and forced motion analyses. In this study, this method is extended to the finite element analysis of the natural frequencies of two dimensional problems. We also propose a modified 16-node element for three dimensional problems, which behaves much like a 20-node element with smaller degree of freedom. The modified 6-node and 16-node elements have been applied to the modal analyses of beams and plates, respectively. The results agree well with the results of the 8-node or 20-node element models.