We have studied the response of molecular clouds in the Galactic disk to a rotating bar by conducting Smoothed Particle Hydrodynamics (SPH) simulations for the Galaxy in order to understand the dynamical structures of the Galactic Center (GC) molecular clouds, and their implications. In our study it was found that the structures of GC molecular clouds could be induced by the combined effects of rotating bar potential, the hydrodynamic collisions and gravitational miss collisions between the clouds.