In this paper, we designed a Molter analysis system using the visual programming method It differs from the existing analysis system in that the various signal processing algorithms represented by icons were designed by GUI concept which provide unskilled user with easy and convenient analysis environment. In order to analyze ECG signal. we only select the icon representing an algorithm to be applied by mouse and arrange the selected icons upon the order to be jlrocessed on screen. As a result it provides a convenient usage and flexibility of analysis. Also, we can find the optimal algorithm for the ambulatory ECG analysis by comparing the several results obtained from the various analysis configuration.