The Parameters of the storage function model (SFM) are taken as constants, while they have different values during every rainfall period and the duration of the runoff. Therefore, the results of the SFM generally show remarkably large errors. In this study, the modified storage function model (MSFM), in which the time variant parameters are introduced, is proposed to improve the SFM which is a conceptual rainfall-runoff model. The fuzzy reasoning method is applied as a real-time control one of the time variant parameters of the proposed model. The applicability of the MSFM was examined in the Bochung river, at a tributary of the Geum River, Korea. The pattern of the predicted runoff hydrograph and the peak discharge by the MSFM with fuzzy control are very similar to the measured values, compared with the results produced by the SFM.