The position control accuracy of a robot arm is significantly deteriorated when a long slender arm robot is operated at a high speed. In this case, the robot arm needs to be modeled as a flexible structure, not a rigid one, and its control system needs to be designed with its elastic modes taken into account. In this paper, the vibration control scheme of a one-link flexible manipulator using adaptive input shaper in conjunction with PID controller is presented. The robot consists of a flexible arm manufactured with a thin aluminium plate, an AC servo motor with a harmonic drive for speed reduction, an optical encoder and an accelerometer. On-line identification of the vibration mode is done using the pruned decimation-in-time FFT algorithm to estimate the parameter of the input shaper. Experimental results of the flexible manipulator with a PID controller and input shaper are provided to show the effectiveness of the advocated controllers.