In this paper, the system performance with the selection diversity, which is applied to the FH/MFSK system in Nakagami fading channel, is analyzed. The deletion probability is derived from the received signal to noise ratio(SNR) after selection combining and the parameters such as the number of users(M), SNR, Nakagami fading figure(m), and the number of diversity branches(D) is used for the performance analysis of the FH/MFSK system. Assuming that m set 1, it is observed that the bit error rate(BER) is 1.0$ imes$$10^{-3}$ and 1.0$ imes$$10^{-4}$ at D =1(no diversity) and D=2, respectively, and then is decreased by 10 times. Assuming that m set 2, it is also shown that the BER has a constant value although D is increased. In the case of D=2, the system capacity is more 75% and 20% than that considering no diversity at SNR=15 dB and 25 dB, respectively.