A numerical analysis algorithm for thermally loaded structures has been proposed and compared with the general free vibration approach to determine the characteristics of thermal load effects in vibration structures. The field of numerical inspection includes free vibration analysis, transient heat transfer analysis and thermal stress analysis. The key point of the analysis of thermally loaded structure is the method of parallel time integration between transient heat transfer and free vibration simultaneously. The results of the study demonstrate the computation of the specific total external force vector and stiffness matrix. The proposed analysis method can be applied to both heated and cooled structure vibration analysis.