The systematic data management system in the area of river flow analysis has not yet constructed, even though the need is evident due to the complicated process of tremendous input/output data in the modeling study and the importance of visualization of spatial flow variation. The objectives of this study are to suggest the method for constructing the NGIS-based river database based on contour, river, elevation, boundary layers and river cross sections and to provide the algorithm for interpolating equi-distance river cross section points. The selected study area is the main Han River starting from Paldang dam site to Indogyo bridge. The constructed database will be useful for the scientific water flow management system in the study area.