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NMR Studies on N-terminal Domain of DNA2
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  • NMR Studies on N-terminal Domain of DNA2
저자명
Jung. Young-Sang,Lee. Kyoung-Hwa,Jung. Jin-Won,Lee. Weontae
간행물명
Journal of the Korean magnetic resonance society
권/호정보
2000년|4권 2호|pp.74-81 (8 pages)
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한국자기공명학회
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

Saccharomyces cerevisiae Dna2 protein has biochemical activities: DNA-dependent ATPase, DNA helicase and DNA nuclease and is essential for cell viability. Especially, Pro$^$504/ is determined as an important residue in ATPase, helicase, and nuclease activity. We synthesized and determined the three-dimensional solution structure of N-terminal domain comprising residues of Val$^$501/ -_Phe$^$508/ (Dna2$^$pep/) using two-dimensional $^1$H-NMR and dynamical simulated annealing calculations. On the basis of a total of 44 experimental restraints including NOEs, $^3$J$\_$$alpha$$eta$/ and $^3$J$\_$$alpha$$eta$/ coupling constants, the solution structures of Dna2$^$epe/ were calculated with the program CNS. The 23 lowest energy structures were selected out of 50 final simulated-annealing structures. The atomic RMSDs of the final 23 structures fur the individual residues were calculated with respect to the average structure. The mean RMSDs for the 23 structures were 0.042 nm for backbone atoms and 0.316 nm for all heavy atoms, respectively. The Ramachandran plot indicates that the $Phi$, Ψ angles of the 23 final structures are properly distributed in energetically acceptable regions. Solution structure of Dna2$^$pep/ showed a single unique turn spanning residues of Asn$^$503/ Val$^$506/.