Recently, the usage of containers in marine transportation is rapidly increasing. The problem of ship stability is important because of its direct influence to the loss of the human-life, ship, and merchandise. However, the assessment for ship stability during container loading/unloading in port is dependent on human experience only. On the other hand, the emerging information and communication technologies of shipbuilding industrial environments are rapidly changing. To respond to the situation, a new paradigm has been matured with new concepts such as the concrete method. Especially, all the efforts are shown to be concentrated to realize the concept of Simulation Based Design(SBD) based on three dimensional Computer Aided Design(CAD) model. In this paper, ship model-based simulation methodology for design and operation of ship is suggested, and for the verification of suggested methodology, the system for stability assessment of ship during container loading/unloading was developed using ENVISION, a general-purpose simulation system. The developed system consists of geometric modeling subsystem, basic calculation subsystem, and Computer Aided Engineering(CAE) subsystem. In addition, interface to CAE/CAD /simulation system such as SIKOB and ENVISION is provided.