In recent years cluster systems using off-the-shelf processors and networks components have been increasing popular. Since actual performance of a cluster system varies significantly for different architectures, representative in-house codes from major application fields were executed to evaluate the actual performance of systems with different combination of CPU, network, and network topology. As an example of practical CFD(Computational Fluid Dynamics) simulations, the flow past an Onera-M6 wing and the flow past an infinite wing were simulated on clusters of Linux and several other hardware environments.