This study was performed to develop an information processing system for the sound conservation of soil and groundwater resources. The system contains numerical models and geographic information systems for underground flow and contamination. Multidimensional Finite Element Model for Subsurface Environment (MFEMSE) was invented to analyze underground flow and pollution problems of water and gas phases. Newly developed and conventional models (MODFLOW, MOC3D, MT3D, PMPATH, PEST, UCODE) were integrated with GIS (ArcView) for the construction of an integrated information management system of subsurface environment. This system was applied to the management of three mineral water companies located in clean high mountain basin. Desirable management criteria and operational strategies were suggested using this system. The system was constructed to be applied for the broad sense of decision supporting tools in related topics of this study, so that it can be used not only for the prevention regulations, but also for clean up projects.