This study is aimed to build an effective information management system for natural ecosystem in local Kang-wha area. We analyze the management strategies for the information related to environment ecosystem and natural ecosystem. A prototype is applied to equip search functions for related-agency information, natural environmental information, spatial information, and ecosystem information. It is also capable of editing the information for related-agency information and natural environmental information. Developed various for future study, a prototype of natural eco-information management system will be operated, which discovers and selves potential problems. It is, in turn, utilited for environmental management system of water quality, air quality and waste management. As the final goal, it is expected to build a total environment information management system by integrating those different environmental information systems.