A transient analysis on temperatures of fuel and oil in hydraulic and lubrication systems in an aircraft was studied using the finite difference method. Numerical calculation was performed by an explicit method with modified Dufort-Frankel scheme. Among various missions, air superiority mission was considered as a mission model with 20% hot day ambient condition in subsonic region. The ambience of the aircraft was assumed as turbulent flow. Convective heat transfer coefficient were used in calculating heat transfer between the aircraft surface and the ambience. For an aircraft on the ground, an empirical equation represented as a function of free-stream air velocity was used. And the heat transfer coefficient for flat plate turbulent flow suggested by Eckert was employed for in-flight phases. The governing equations used in this analysis are the mass and energy conservation equations on fuel and oils. Here, analysis of fuel and oil temperature in the engine was not carried out. As a result of this analysis, the ground operation phase has shown the highest temperature and the largest rate of temperature increase among overall mission phases. Also, it is shown that fuel flow rate through fuel/oil heat exchanger plays an important role in temperature change of fuel and oil. This analysis could be an important part of studies to ensure thermal stability of the aircraft and can be applicable to thermal design of the aircraft fuel system.