Using the finite element method, this study investigates the dynamic time responses of a flexible spinning disk of which axis of rotation is misaligned with the axis of symmetry. The misalignment between the axes of symmetry and rotation is one of the major vibration sources in optical disk drives such as CD-ROM, CD-R, CD-RW and DVD drives. Based upon the Kirchhoff plate theory and the von-Karman strain theory, three coupled equations of motion for the misaligned disk are obtained: two of the equations are for the in-plane motion while the other is for the out-of-plane motion. After transforming these equations into two weak forms for the in-plane and out-of-plane motions, the weak forms are discretized by using newly defined annular sector finite elements. Applying the generalized-$alpha$ time integration method to the discretized equations, the time responses and the displacement distributions are computed and then the effects of the misalign ment on the responses and the distributions are analyzed. The computation results show that the misalignment has an influence on the magnitudes of the in-plane displacements and it results in the amplitude modulation or the beat phenomenon in the time responses of the out-of-plane displacement.