This paper presents desirable water environmental management to a closed watershed. In order to obtain spatially distributed environmental information, GIS data have been used. Elevation data are used to extract stream channels automatically and to divide networks of a watershed. A Digital Elevation Model (DEM) has been developed, validated, and adopted to estimate the runoff of total nitrogen pollutant from watershed. This GIS-linked model can be applied effectively to the watersheds with many sub-streams, and for the estimation of pollutant runoff considering land use change.