To carry out systematic groundwater assessment, exploration and management and to use these for protection of optimal groundwater yield, a data analysis and management system is required. Thus, the object of this research was to develop and apply software that integrates GIS and groundwater modeling: GISGAM (GIS for groundwater analysis and management system). The GIS program ArcView and the groundwater-modeling program MODFLOW were used for the GISGAM. The program components consist of a pre-processor, a processor, and a post-processor for groundwater modeling. In addition, GIS functions such as input, manipulation, analysis and output of data were embedded into the program. In applying the program to pilot area, topography, geology, soil, land use and well databases, and a groundwater flow model were constructed for the study area. This case study revealed the advantage and convenience of groundwater modeling using GIS capabilities. By integrating GIS and the groundwater model, the impact of changing values of hydrogeological constants on model results could be more easily evaluated.