The research was carried out to know the occurrence trend of scuticociliatosis and mortality of fingerlings in flounder. The diseased fish were collected from on-land rearing farms lind hatcheries of flounder in Jeju Island from January 1991 to December 2001. Occurrence of scuticociliatosis was about 10% of total occurred diseases from 1991 to 1996, but increased to 34.5% in 2001. Although monthly occurrence of scuticociliatosis was not related to season from 1999 to 2001, the highest occurrence was revealed in July and August. Mixed infections of bacteria including Vibrio sp. Edwardsiella tarda, Streptococcus sp., and Flexibacter sp. with scuticociliates were observed. Among the bacteria, Vibrio sp. was the highest frequency(40.1%), and the lowest one(10.1%) was Streptococcus sp., Mortality of fingerlings by scuticociliates was different sharply according to size of fish. Mortality of infected fingerlings below 7 cm of total length was 53.8%, while that of normal fingerling above 7 cm of total length was 13.2%. When fish were grown above 25 cm, mass mortality by scuticociliates infection was decreased markedly.