Currently, the availability of 3-D topographical survey by combination of GPS and Echo Sounder has been increased in the various field like as the construction of structure, the dredging and the reclamation in the ocean and river, and observation of topographic change in seabed or riverbed. In this case, the error of depth sounding can divide in form that is happened by combination of GPS and Echo Sounder, and form that is happened in Echo Sounder itself, In this study, in the case happen by Echo Sounder itself, analyzed error by specially about geological features of the seabed and riverbed that is specular surface of sound wave and wished to present solution way. The sounding error about the echo sounder and characteristic of estuary riverbed was found by understanding the relation of average diameter and residual error and we defined correction formula, Y=-0.00474$^{*}$In(X) -0.0045 by the regression analysis. and then we verified applicability of correction formula. As the result, if measure Preliminary investigation or pre-survey the geological features for the survey area at topographical survey of estuary riverbed, we presented the error correction formula that estimate and can correct of error by Echo Sounderer