As the sustaindble development becomes the main goal of the global world in the 21st century, it is important that technological innovations should be realized ecologically sound based on co-evolutionalry approach. From this perspective, the trans-disciplinary research method is gaining importance in the evaluation process of public funded R&D, especially in the environmental technology. In our evaluation research on the R&D projects of the $CO_2$reduction and sequestration technology in Korea, we attempt to apply a trans-disciplinary integrated method on the concept of the eco-innovation, the technology push and the market pull. Also, we try to develop the trans-disciplinary indicators of the environmental technology evaluation. This research confirms the necessity of trans-disciplinary research among the three academic perspectives, engineering, social sciences and public policy.