Supply chain performance management is the essential part of various business activities in supply chain management area, and integrating it with general business management improves the supply chain performance. Although supply chain performance management is important and expected of market growth, there are few researches on this area and lack of practical applications. To resolve these problems, this paper presents a new performance management methodology for a supply chain integrating SCOR (Supply Chain Operational Reference) model and Balanced Scorecard (BSC). And we develop a framework of the Supply Chain Performance Management System (SCPMS) based on this methodology, and implement a prototype system.