Floods are disastrous natural phenomena which result in numerous losses of life and property. It is possible to minimize the potential risk by adopting a disaster management system. Nowadays, Geo-Spatial Information System(GSIS) and computer-modelling techniques have assisted scientists and engineers with determining flood disaster assessments, GIS technologies especially have the advantage of performing spatial analysis as well as generating the model for a flood hazard. Therefore, this paper presents the flood management system based on 3D GSIS that can cope with natural disasters actively and manage flood hazard systematically by constructing the database using hydrological data, digital map, DEM, and high-resolution satellite images.