We proposed the division algorithm that was aimed at dividing system models. It used a transitive matrix to express the relation between place and transition. And the division algorithm was applied to the scheduling problem, with the division-scheduling algorithm. The division-scheduling algorithm was able to calculate the divided subnet table. And it is able to reduce the analysis complexity. In this study, we applied the proposed division algorithm and division-scheduling algorithm to flexible manufacturing system models. We compared the efficiency and performance of the division-scheduling algorithm with the Hillion algorithm, Korbaa algorithm, and Unfolding algorithm proposed in previous researches.