This study intends to design a metadata service system of the science information for youth on the web based on the efficiency of the metadata system. Metadata scheme of the science information for youth on the web has been developed and designed metadata collection on the basis of the previously designed classification system. Metadata scheme of the science information for youth, which is consisted of six essential elements and four additional elements, has been brought out, compared to not only Dublin Core Metadata Element Set, but also the main studies related to domestic and foreign metadata projects. Based on the results of it, metadata database of the science information has been designed and it is expected to be applicable to metadata service system of the science information for youth on the web.