In this paper, we describe a cross-morpheme pronunciation variation model which is especially useful for constructing morpheme-based pronunciation lexicon to improve the performance of a Korean LVCSR. There are a lot of pronunciation variations occurring at morpheme boundaries in continuous speech. Since phonemic context together with morphological category and morpheme boundary information affect Korean pronunciation variations, we have distinguished phonological rules that can be applied to phonemes in within-morpheme and cross-morpheme. The results of 33K-morpheme Korean CSR experiments show that an absolute reduction of 1.45% in WER from the baseline performance of 18.42% WER was achieved by modeling proposed pronunciation variations with a possible multiple context-dependent pronunciation lexicon.