Power qualify monitoring system is devoted to more concern than before, because the innovation of industrial technology needs more accurate instruments and more advanced power quality. This paper was studied on using data of the protective relay by Power Quality Monitor. This paper was proposed the wave storage condition and monitoring clauses of the protective relay as a power quality monitoring device. The protective relay will have problem to save data for PQM analysis because the protective relay memory is limited. Therefore this paper was proposed new a data compression of data got from the protective relay. This method is wave compression comparison algorithm using the DFT. The compression rate is higher than any other established method. This method can be real time storage. This algorithm is verified using the comparison among other compression rate and proved by Real Time Digital Simulator (RTDS).