A ship may suffer sinkage and heel due to flood in a compartment caused by damage on a deck. The motion and waveloads of the heeled ship floating in waves have been analyzed by making use of a three dimensional potential theory taking account of the hydrodynamic pressure in the flooded compartments. The shear forces and bending moments due to radiation-diffraction waves have been calculated by the direct integration of the 3-d hydrodynamic pressure on the outer and inner hulls of floating barges. The motion responses and the relative flow rate across the mean free surface of the water in the flooded compartments are also presented.