This paper is concerned with the implementation of auto-tuning positive position feedback controller using a digital signal processor and microcontroller. The main advantage of the positive position feedback controller is that it can control a natural mode of interest by tuning the filter frequency of the positive position feedback controller to the natural frequency of the target mode. However, the positive position feedback controller loses its advantage when mistuned. In this paper, the fast fourier transform algorithm is implemented on the microcontroller whereas the positive position feedback controller is implemented on the digital signal processor. After calculating the frequency which affects the vibrations of structure most, the result is transferred to the digital signal processor. The digital signal processor updates the information on the frequency to be controlled so that it can cope with both internal and external changes. The proposed scheme was installed and tested using a beam equipped with piezoceramic sensor and actuator. The experimental results show that the auto-tuning positive position feedback controller proposed in this paper can suppress vibrations even when the target structure undergoes structural change thus validating the approach.