In this paper, the feedforward control with least mean square (LMS) adaptive algorithm is proposed and examined to reduce rotating error by runout of an active magnetic bearing system. Using eddy-current type gap sensors for control, the electrical runout caused by non-uniform material properties of sensor target produces rotational error amplified in feedback control loop, so this runout should be eliminated to increase rotating accuracy. The adaptive feedforward controller is designed and examined its tracking performances and stability numerically with established frequency response function. The designed feedforward controller was applied to a grinding spindle system which is manufactured with a 5.5 kW internal motor and 5-axis active magnetic bearing system including 5 eddy current gap sensors which have approximately 15∼30㎛ of electrical runout. According to the experimental results, the error signal in radial bearings is reduced to less than 5 ,Urn when it is rotating up to 50,000 rpm due to applying the feedforward control for first order harmonic frequency, and corresponding vibration of the spindle is also removed.