In the global ship structure and vibration analysis, the FE(finite element) analysis model is required in the early design stage before the 3D CAD model is defined. And the analysis model generation process is a time-consuming job and takes much more time than the engineering work itself. In particular, ship structure has too many associated structural members such as stringers, stiffness and girders etc. These structural members should be satisfied as the constraints in analysis modeling. Therefore it is necessary to support generation of analysis model with satisfying these constraints as an automatic manner. For the effective support of the global ship analysis modeling, a method to generate analysis model using initial design information within ship design process, that hull form offset data and compartment data, is developed. In order to easily handle initial design information and FE model information, flexible data structure is proposed. An automatic quadrilateral mesh generation algorithm using initial design information to satisfy the constraints imposed on the ship structure is also proposed. The proposed data structure and mesh generation algorithm are applied for the various type of vessels for the usability test. Through this test, we have verified the stability and usefulness of this system including mesh generation algorithm.