In summer and early autumn, eutrophication occurs occasionally in many reservoirs. Lakeside macrophyte which is one of internal pollutants effects on water quality when it is submerged during water surface is rising after rainy season. This study include examination of pollutant load, species of plant, community structure and productivity of macrophyte in unit area at lakeside. The result of this research will be used as a guideline of water quality management on reservoir through assessing water quality effect of submerged plant. The areal distribution, composition of species and submerged area of macrophyte changes according to rainfall pattern every year, so it is difficult to calculate nutrient load annually from submerged macrophyte. In this study, the nutrient load from submerged macrophyte assess from Daecheong and Juam reservoir in 2001. TN and TP load of submerged macrophyte shows 0.043% and 0.069%, respectively, of annual discharge load on Daecheong watershed. At lake Juam, TN and TP shows 0.64% and 1.28% load, respectively. The reason that nutrient load of lake Juam is greater than that of lake Daecheong is that macrophyte distribution area of lake Juam is 5 times greater than that of lake Daecheong. Total nutrient load of lake Daecheong is 3 times greater than that of lake Juam.