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서지반출
Molecular Phylogenetic Analysis of HIV -1 vif Gene from Korean Isolates
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  • Molecular Phylogenetic Analysis of HIV -1 vif Gene from Korean Isolates
  • Molecular Phylogenetic Analysis of HIV -1 vif Gene from Korean Isolates
저자명
Park. Chan-Seung,Kim. Mi-Sook,Lee. Sung-Duk,Kim. Sung-Soo,Lee. Keon-Myung,Lee. Chan-Hee
간행물명
The journal of microbiology
권/호정보
2006년|44권 6호|pp.655-659 (5 pages)
발행정보
한국미생물학회
파일정보
정기간행물|ENG|
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기타
이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

Phylogenetic studies of nef, pol, and env gene sequences of HIV-1 isolated from Koreans suggested the presence of a Korean clade in which Korean sequences are clustered to the exclusion of foreign sequences. We attempted to identify and characterize the Korean clade using all vif gene sequences isolated from Koreans registered in the NCBI GenBank database (n = 233). Most (77 %) of the Korean isolates belonged to the Korean clade as a large subcluster in subtype B, designated the Korean clade subtype B ($K_{C}B$). $K_{C}B$ sequences were relatively homogenous compared to Korean subtype B sequences that did not belong to the $K_{C}B$ (non-Korean clade subtype B; $NK_{C}B$). Comparison of amino acid frequencies of $K_{C}B$ and $NK_{C}B$ sequences revealed several positions where the amino acid frequencies were significantly different. These amino acid residues were critical in separating $K_{C}B$ from $NK_{C}B$ or from foreign sequences, since substitution of these amino acids in $K_{C}B$ with the $NK_{C}B$ amino acids relocated the $K_{C}B$ sequences to $NK_{C}B$, and vice versa. Further analyses of $K_{C}B$ will help us to understand the origin and evolutionary history of $K_{C}B$.