To clarify the seasonal changes of the phytoplankton community in seagrass beds, the abundance and distribution of phytoplankton, and environmental factors were measured in seagrass beds: in the Dongdae Bay and Aenggang Bay on the southern coast of Korea, and off Seungbong Island on the western coast of Korea, in October 2002, January, March, and June 2003. Water temperature, salinity, SPM, chlorophyll a, aboveground biomass of seagrass, DIN and DIP concentrations significantly changed within the sampling time. The taxa of phytoplankton observed in seagrass beds were classified as 3 divisions, 3 classes,4 orders,16 families, 27 genera, 65 species. 50 species of diatoms were recognized with 14 species of dinoflagellates, and 1 species of silicoflagellate. The species of genera Coscinodiscus and Thalassiosira were dominant all around the study areas but Peridinium granii, Eucampia zodiacus and Pleurosigma elongatum were seasonally dominant. Phytoplankton standing crops varied from minimum of $0.6{ imes}10^3;cells;l^{-1}$ (June, Dongdae Bay) to maximum$21.1{ imes}10^3;cells;l^{-1}$(March, Aenggang Bay). The standing crops and species composition of phytoplankton were relatively lower and simpler than those of other southern and western coastal areas. Seasonal variations of diatom standing crops in seagrass beds were attributed to seasonal changes in DIN and in DIP of water column.