Fallow paddy areas have been increased due to the import of cheap agricultural product, and the unbalance between farming cost and rice price since 1990. The increasing fallow paddy area needs to be protected from the devastation by weed breeding for the re-cultivation. In this study, two fallow paddy fields managed with different water depth were selected for monitoring and analysing of water quality, water balance and plant body change. The managed fallow paddy fields were more effective in water quality purification and plants growth control than non-managed fallow paddy fields. And the fallow paddy field managed with some degree of water depth was the most effective field in terms of weed control.