In this paper EMI problems with induction motor drive system using multi-level inverters are investigated. The high power multi-level inverter usually operates with low switching frequency and produces large noises. Generally, EMI consists of the conduction component through source lines and emission component emitted to the space. This conduction component can be classified to the common-mode between source line and ground, and the normal-mode between lines. The EMI filters for the induction motor drive system are designed and implemented to reduce EMI noise. Finally the designed system is verified by the experiment. The experimental results show that both the normal mode and common mode noises are greatly reduced compared to the system without filters.