This paper describes a method of parameter estimation of time series data using discrete Fourier transform(DFT). DFT have been mainly used to precisely and rapidly obtain the frequency of a signal. In a dynamic system, a real part of a mode used to learn damping characteristics is a more important factor than the frequency of the mode. The parameter estimation method of this paper can directly estimate modes and parameters, indicating the characteristics of a dynamic system, on the basis of the Fourier transform of the time series data. Real part of a mode estimates by subtracting a frequency of the Fourier spectrum corresponding to 0.707 of a magnitude of the peak spectrum from a peak frequency, or subtracting a frequency of the power spectrum corresponding to 0.5 of the peak power spectrum from a peak frequency, or comparing the Fourier(power) spectrum ratio. Also, the residue and phase of time signal calculate by simple equation with the real part of the mode and the power spectrum that have been calculated. Accordingly, the proposed algorithm is advantageous in that it can estimate parameters of the system through a single DFT without repeatedly calculating a DFT, thus shortening the time required to estimate the parameters.