This paper presents the design of a submerged breakwater, which functions as an eco-structure in a marine environment. Newly patented blocks were used in the submerged breakwater to both make it stable and provide an inhabitable space for fish. To investigate the wave transmission of the proposed submerged breakwater, parametric studies were conducted through two-dimensional hydraulic tests, which were carried out at the National Fisheries Research and Development Institute (NFRDI) in South Korea. Those parameters are relative crest width (B/L), wave steepness (H/L), relative crest depth (hB/H), and submerged breakwater configuration. The hydraulic experimental results can be used to predict the performance of the proposed submerged breakwater covered with the multi-function blocks.