Netherlands had suggested a uniform system to standardize and simplify EDI systems relating to the Arrival/Departure, stay, and clearance of ships, persons, and cargoes for the Facilitation of International Maritime Transport to the International Maritime Organization(IMO). Republic of Korea proposed the Framework of XML-based Single Window System for the simplified clearance of ships to the 32nd session of Facilitation Committee of the IMO. Accordingly the authors studied that the XML Infrastructure for Single Window efficiently supports the Single Window service and the business collaboration between business entities of logistics. The proposed XML Infrastructure designs to support the various document format translation and to easily manage. Therefore business entity using the proposed system has the effect of downing the resource and costs on using Single Window.