Payment and security requirement are playing an increasingly critical role in RFID system, allegedly the core of the ubiquitous, especially in logistics. Therefore, security technology has been playing essential role gradually unlike the past when only the perception of equipment was considered important technology. The current encoding system allows the access only to the user who has the secret key. Many encoding algorithm has been studied to ensure the security of secret key. Security protocol is the most typical way to authorize appropriate user perception by using the data and secret key to proceed the encoding and transmit it to the system in order to confirm the user. However, RFID system which transmits more than dozens of data per second cannot be used if the algorithm and protocol of the existing wired system are used because the performance will degrade as a consequence. Security protocol needs to be designed in consideration of property of RFID and hardware. In this paper, a protocol was designed using SNEP(Sensor Network Encryption Protocol), the security protocol used for the sensor similar to RFID- not the current system used in wired environment- and ECC (Elliptic Curve Cryptography: oval curve encoding), the encoding algorithm.