The purpose of this research is to suggest an improved method of how to apply and operate an average floor height system to rebuilt or redeveloped apartment buildings in general residential areas of Seoul. This research suggested two research findings by a computer simulation study for analyzing the difference between the average floor height of apartment buildings in experimental sites and the average of floors of buildings near experimental sites. The first finding is that an average floor height system should be applied to apartment buildings with a limitation of maximum height at sites larger than $12,000m^2$ in order to control the difference of the maximum height of buildings between apartment sites and their surroundings. The second finding is that the average floor height system should be operated by an appropriate average floor height ratio at sites greater than $50,000m^2$ in order to harmonize rebuilt or redeveloped apartment buildings with their surroundings.